Soreghan B, Thomas SN, Hsu J and Yang AJ. High throughput proteomic-based identification of oxidatively induced protein carbonylation in mouse brain. (2003) Pharmaceutical Research 20(11):1713-20.
Schiewe AJ, Margol L, SoreghanB, Thomas SN and Yang AJ.. Rapid Characterization of Amyloid-ß Side Chain Oxidation by Tandem Mass Spectrometry and the Scoring Algorithm for Spectral Analysis. (2004) Pharmaceutical Research 21 (7) 1094-1102.
Carter TL. Verdile G, Groth D., Bogush A, Thomas S, Shen P, Fraser PE, Mathews P, Nixon RA, Ehrlich ME, Kwok JB, St George-Hyslop P, Schofield P, Li Y, Yang, AJ, Martins RN and Gandy SE. Alzheimer Amyloid Precursor Aspartyl Proteinase Activity in CHAPSO Homogenates of Spodoptera frugiperda cells. (2004) Alzheimer Disease and Associated Disorders 18(4):261-3.
Thomas SN, Soreghan BA, Head E, and Yang AJ. Reduced expression of synaptic transmission modulator HNK-1/ Neural Cell Adhesion Molecule (NCAM) as a consequence of Aß -mediated oxidative stress: a proteomic approach. (2005) Journal of Neurochemistry 92(4):705-17.
Thomas SN., Soreghan B, Duff, K, and Yang, AJ. Proteomic and network component analysis of PS1/APP mouse model of Alzheimer's disease. (2005) Journal of Alzheimer's Disease 8(3)227-41.
Wan Y, Yang A and Chen T. PepHMM: A hidden Markov model based scoring function for mass spectrometry database search. (2006) Journal of Analytical Chemistry 78(2):432-7.
Cripps D, Thomas SN, and Davies P and Yang AJ. Alzheimer's-disease-specific conformation of hyperphosphorylated phf-tau Is polyubiquitinated through lys-48, lys-11, and lys-6 ubiquitin conjugation. (2006) Journal of Biological Chemistry 281 (16):10825-38.
Lesne S, Koh MT, Kotilinek L, Kayed R, Glabe CG, Yang A, Gallagher M, Ashe KH. A specific amyloid-beta protein assembly in the brain impairs memory. Nature. 2006 Mar 16;440(7082):352-7.
Thomas, SN., Lu B, Nikolskaya, T., Yuri N., and Yang AJ. MudPIT (Multidimensional Protein Identification Technology) for identification of post-translational protein modifications in complex biological mixtures. In Redox proteomics: from protein modifications to cellular dysfunction and diseases. (2006) Wiley Inter Science.